PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G203900.1.p
Common NameLOC101752677, SETIT_028242mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 254aa    MW: 28189.7 Da    PI: 6.9258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G203900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11178219955
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Seita.8G203900.1.p 178 AKKRRERINEKLKTLQQLIPNG-----TKVDMSTMLEEAVQYVKFLQ 219
                         59******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-15166234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-15167233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.415169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-11175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-11178223No hitNo description
PfamPF000104.9E-9179219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEAKCASIWN EESEMIAHLQ SMFWNSSDAD ASLSSPNSST SSCIEPSTLP TALFLPLIGR  60
ESYDTAPLRN TAADWCFDHQ SQAFAPIANA VTGDKRAVRI DEGRKKSTNS NKKARIVAPV  120
LRTLSSSALD DEANNELINH SSSEDDSIGM CEESVVLKQR SSSRGRSRSS KNSQSVYAKK  180
RRERINEKLK TLQQLIPNGT KVDMSTMLEE AVQYVKFLQL QIKLLSSDET WMYAPLAYNH  240
MTIDINMNSS VKQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G203900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980781.10.0transcription factor bHLH139
SwissprotQ8LEG19e-37BH054_ARATH; Transcription factor bHLH54
TrEMBLK3ZNR20.0K3ZNR2_SETIT; Uncharacterized protein
STRINGSi028242m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-35bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Han Y, et al.
    Altered expression of TaRSL4 gene by genome interplay shapes root hair length in allopolyploid wheat.
    New Phytol., 2016. 209(2): p. 721-32
    [PMID:26334764]
  3. Datta S,Prescott H,Dolan L
    Intensity of a pulse of RSL4 transcription factor synthesis determines Arabidopsis root hair cell size.
    Nat Plants, 2015. 1: p. 15138
    [PMID:27251390]
  4. Song L, et al.
    The Molecular Mechanism of Ethylene-Mediated Root Hair Development Induced by Phosphate Starvation.
    PLoS Genet., 2016. 12(7): p. e1006194
    [PMID:27427911]
  5. Vijayakumar P,Datta S,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE4 (RSL4) promotes root hair elongation by transcriptionally regulating the expression of genes required for cell growth.
    New Phytol., 2016. 212(4): p. 944-953
    [PMID:27452638]
  6. Hwang Y,Choi HS,Cho HM,Cho HT
    Tracheophytes Contain Conserved Orthologs of a Basic Helix-Loop-Helix Transcription Factor That Modulate ROOT HAIR SPECIFIC Genes.
    Plant Cell, 2017. 29(1): p. 39-53
    [PMID:28087829]
  7. Marzol E,Borassi C,Denita Juárez SP,Mangano S,Estevez JM
    RSL4 Takes Control: Multiple Signals, One Transcription Factor.
    Trends Plant Sci., 2017. 22(7): p. 553-555
    [PMID:28487046]
  8. Stanley CE, et al.
    Dual-flow-RootChip reveals local adaptations of roots towards environmental asymmetry at the physiological and genetic levels.
    New Phytol., 2018. 217(3): p. 1357-1369
    [PMID:29125191]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]
  10. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]