PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G174000.1.p
Common NameLOC101776549, SETIT_011076mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 202aa    MW: 20819.6 Da    PI: 10.5997
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G174000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.26.3e-3450141989
                 TCP   9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.eaesssssasnsssg......... 88 
                         +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a  +c +a s s +a+++  g         
  Seita.7G174000.1.p  50 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCsSAPSTSPAAAHPLLGkrpredhep 140
                         89*******************************************************9999944554333333333333333333333333 PP

                 TCP  89 k 89 
                         +
  Seita.7G174000.1.p 141 A 141
                         1 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-2949125IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00949103IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MASRDAATFQ VYRPMPAPSP APAPMSLAAA APASDVAAPA PKKASPGAGK DRHSKVNGRG  60
RRVRMPIVCA ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP AVFSCSSAPS  120
TSPAAAHPLL GKRPREDHEP APAPAPFWAT LQARPVAWGL SPAQEAAAQA YASVAAAQQG  180
HHLNLLSVLS GATRPSEEES R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G174000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276961e-114KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976294.11e-140transcription factor PCF1
SwissprotQ9FMX25e-38TCP7_ARATH; Transcription factor TCP7
TrEMBLK3YA341e-139K3YA34_SETIT; Uncharacterized protein
STRINGSi011076m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-34TCP family protein