PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G008200.1.p
Common NameSETIT_012600mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 258aa    MW: 27601.6 Da    PI: 6.314
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G008200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57344.54.2e-1444139397
              DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                         f r+wse De+ +L Gl  ++a++g+ p    ++a     ++  +++++ +++ eK+rrL+ K+ + ++       e   +  ++   +el
  Seita.7G008200.1.p  44 FVRVWSEADEVRILEGLAAYAADHGAPPARsQLHAAL-EGRSLDKAEFTVTEIYEKVRRLRTKYCNLRDAgGPPVPEGGEDGGDEVRKYEL 133
                         89***********************988773444444.4566778999******************9999544455555667778889*** PP

              DUF573  92 skkiWg 97 
                         sk iWg
  Seita.7G008200.1.p 134 SKAIWG 139
                         *****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.6E-1844139IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MNRPPHSSRT ADLVSPAADA AVEEAPMAAS KPAAGVRKKP SVAFVRVWSE ADEVRILEGL  60
AAYAADHGAP PARSQLHAAL EGRSLDKAEF TVTEIYEKVR RLRTKYCNLR DAGGPPVPEG  120
GEDGGDEVRK YELSKAIWGD QPANVAKKGG STSAAAVAVL PKAGGAIPRV RRGLEELQGL  180
FPCLAAEVEK VTNDEMLAPV LKRAFEFIDD QKAGELDDKV KKQMVKEAQV TMSGATLRDE  240
VLKMLIRSME IDMASVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974990.10.0PREDICTED: uncharacterized protein LOC101779795
TrEMBLK3YED70.0K3YED7_SETIT; Uncharacterized protein
STRINGSi012600m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1462199