PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G422100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 308aa    MW: 33525.7 Da    PI: 4.7658
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G422100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05280303123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y+C+ C+k+F ++  L +H ++ H
  Seita.5G422100.1.p 280 YSCKSCSKTFYSSVALDTHRKVkH 303
                         99******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.009280307IPR007087Zinc finger, C2H2
PROSITE patternPS000280282303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDFASCKHWG VLVRPGETVK CNPGEVYCHV SQIALQDDKG NEDVRVFVKV GGNEILVGTL  60
SVDKYPQCMI GLVFEKEFEL RHTSKNSNIS ALGYKFCETK SYSDTSTDDD DDSDEEVPLA  120
IPLYPNADDD RSKQTKSGVD NPASTQLCKP KNTLEETKDP EKQKGDVGGT DDDHSDENSV  180
HSEEGESGDD EDSSDEDDSD SSDEDDGEDT PKNIMGKNRP AETPLKTPLK KAKIATPSMG  240
NKTGSGSTKR SGYVHVATPY PKQVKKTPSI IDSSKQSAGY SCKSCSKTFY SSVALDTHRK  300
VKHNAHK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701520.10.0PREDICTED: uncharacterized protein LOC101777617
TrEMBLK3XJV21e-178K3XJV2_SETIT; Uncharacterized protein
STRINGSi002175m1e-177(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.17e-18histone deacetylase 2C