PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G415800.1.p
Common NameSETIT_000593mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 699aa    MW: 72864.5 Da    PI: 6.9339
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G415800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.4e-15272331155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Seita.5G415800.1.p 272 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 331
                         57*******************666664478446*************************98 PP

2AP246.78e-15374425155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Seita.5G415800.1.p 374 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 425
                         57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-12272331IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-17272341IPR016177DNA-binding domain
CDDcd000182.06E-20272341No hitNo description
SMARTSM003807.2E-30273345IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-16273340IPR001471AP2/ERF domain
PROSITE profilePS5103219.23273339IPR001471AP2/ERF domain
PRINTSPR003673.7E-6274285IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17374435IPR016177DNA-binding domain
PfamPF008479.9E-10374425IPR001471AP2/ERF domain
CDDcd000181.17E-22374435No hitNo description
PROSITE profilePS5103219.045375433IPR001471AP2/ERF domain
SMARTSM003801.5E-33375439IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-18375434IPR001471AP2/ERF domain
PRINTSPR003673.7E-6415435IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MATVNNWLAF SLSPQDLPPS QTDSTLISAT ATDEVSGDVC FNIPQDWSMR GSELSALVAE  60
PKLEDFLGGI NFSEQHHKAN LNVIPSSSNA CYASSGASTG YHQLYHHQSS ALHFADSVMV  120
ASSAGVHDGG ASMLSAAATV NGGAGAASAN GGSIGLSMIK NWLRSQPAPP LPQPRVVAAA  180
EGAQAAQGLS LSMNMAGAQG AGMPLLAGER GRAPESVSTS AQGGAVAARK EDSGSSGGAG  240
ALLAVSTDTG GSGTVAETAA RKTVDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ  300
TRKGRQVYLG GYDKEEKAAR AYDLAALKYW GPTTTTNFPV SNYEKELEEM KHMTRQEFVA  360
SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA  420
IKFRGLNAVT NFDMSRYDVK SILDSSALPI GSAAKRLKEA EAAASAQHAG VVSYDVGRIA  480
SHLGDGGALA AYGTHYHAAA AAWPTIAFQP SAAAAGLYHP YAQPMRGWCK QEQDHAVIAA  540
AHSLHELNHL NLGAGGGAHD FFSAGQAAMH GLGSIDNASL EHSTGSNSVV YNGVGDSNGG  600
AVGGGYMMPM SAATATTTAM VSHEQVHARS HQGEHDEATK QAAQMGYESY LVNAEAAYGG  660
GRMPSWTPAS APAAASSNDN MAGVGHGGAQ LFSVWNDT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970928.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ5YGP71e-136PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLK3XFC40.0K3XFC4_SETIT; Uncharacterized protein
STRINGSi000593m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-124AP2 family protein