PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G356300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 529aa    MW: 57122.1 Da    PI: 9.0742
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G356300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.56.9e-13168227155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+w++ +g+++A+++d          k+ k+++lg f+++e Aa  ++ a++k++g
  Seita.5G356300.1.p 168 SIYRGVTWHRVSGKFEAHLWDrHAR-SpaknKKgKQVYLGAFDSEEAAAHTYDLAALKYWG 227
                         57*******************4433.34545446*************************98 PP

2AP251.42.6e-16270322156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         s y+GV  ++ +grW+A+I     ng +k+ +lg fgt eeAa+a++ a+++l+g+
  Seita.5G356300.1.p 270 SEYRGVAKHHHNGRWEARIGY--ANG-KKYLYLGIFGTQEEAARAYDLAALELRGH 322
                         569***************644..366.8**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-14168234No hitNo description
SuperFamilySSF541711.05E-14168236IPR016177DNA-binding domain
PfamPF008479.7E-10168227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-14169235IPR001471AP2/ERF domain
SMARTSM003805.2E-19169241IPR001471AP2/ERF domain
PROSITE profilePS5103217.438169235IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-16270331IPR016177DNA-binding domain
CDDcd000189.91E-20270331No hitNo description
Gene3DG3DSA:3.30.730.101.1E-17271329IPR001471AP2/ERF domain
PROSITE profilePS5103217.477271329IPR001471AP2/ERF domain
SMARTSM003807.0E-25271335IPR001471AP2/ERF domain
PfamPF008479.9E-13271322IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MVNPSSQKSR WCGEPFPPPY RQGSPALSGS GPDLLPISSK RSHPPLCKSA VSTLLFTTAD  60
SPSRSNIEGQ RERSRAKKAK PRPAGLNPGP LAMTRPHCAA TSLSPSSRVG SSSLSCVSSS  120
ASSSSGSCYV PASWPPKCGS KKKRSNRRRA KNGTGGSADA VVPRRNSSIY RGVTWHRVSG  180
KFEAHLWDRH ARSPAKNKKG KQVYLGAFDS EEAAAHTYDL AALKYWGSDC KLNFTLESYK  240
QEHERMQRMT REAYLATLRR RSSCFSRGAS EYRGVAKHHH NGRWEARIGY ANGKKYLYLG  300
IFGTQEEAAR AYDLAALELR GHAAITNFDI SSYADYLQPP PVSKAQARSA LKPKAEPVDE  360
APLLPTKTAT GWTTPLLTPK PEPEDEEVEP LVAALPPGPV LRDVDHAIAE MPPGPVLRDA  420
DDVDHAIAEI LPALGMDPAD FEARYPARAL GWLPDDDHHQ LRALPLPDAG RFEDDIETLF  480
DAPGSAGPGQ GEVVHVQLPA AVEPDASGAD AVSYAAATIS SLASGRWW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493533e-50EU949353.1 Zea mays clone 402937 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970326.20.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLK3XQN50.0K3XQN5_SETIT; Uncharacterized protein
STRINGSi004222m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.39e-77AP2 family protein