PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G149100.1.p
Common NameSETIT_004564mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 451aa    MW: 46502.6 Da    PI: 7.1175
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G149100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.62.3e-3490187286
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaessss 80 
                         +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +             ++++s++ ++s ++
  Seita.5G149100.1.p  90 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLEVLpawqptatvanaAAPPSSSTHPDSAEN 180
                         79**************************************************************887777777665444444443333333 PP

                 TCP  81 sas.nss 86 
                         s++ ++ 
  Seita.5G149100.1.p 181 SDDqAQA 187
                         3320222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-3190187IPR005333Transcription factor, TCP
PROSITE profilePS5136933.25792150IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MGDAGQSHHH HHHGFQPQLL SFGGVGGQHH VHQFAAQAPA AASHSRSRGG AGAGGEIVAA  60
TPASHSRVRG GGGGGGEIVA VQGGHIVRST GRKDRHSKVC TARGPRDRRV RLSAHTAIQF  120
YDVQDRLGYD RPSKAVDWLI KNAKDAIDKL EVLPAWQPTA TVANAAAPPS SSTHPDSAEN  180
SDDQAQAITV AHTSFDFPGA GGASGGAGGT GFLPASLDSD SIADTIKSFF PMAGTAGGEA  240
SSSTAAAQSS AMGFQSYTPD LLSRTGSHSQ ELRLSLQSHP DPMFQQQQDR SHGHGGNGSA  300
QQALFPGAAS YSFGGGGAMW AEQAQGQQRM VPWNVPDPGG GSTGGYLFNV SQQAAHMQAA  360
LAGQSQFFFQ RGPLQSSNQP SDRGWPETVE ADNPMQHHQG QGGLNPTVFA PGVGFPGFRI  420
PTRIQGDEEH NGGGGNGDKT PPSVSSASHH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2097150154Putative transcription factor PCF6
5zkt_B1e-2097150154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G149100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557080.0EU955708.1 Zea mays clone 1543050 mutant cincinnata mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968615.10.0transcription factor PCF5
RefseqXP_022682845.10.0transcription factor PCF5
SwissprotQ8LT070.0PCF5_ORYSJ; Transcription factor PCF5
TrEMBLA0A368R4V00.0A0A368R4V0_SETIT; Uncharacterized protein
STRINGSi004564m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-61TCP family protein