PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G062000.1.p
Common NameLOC101778808, SETIT_005179mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 407aa    MW: 42522.6 Da    PI: 4.8821
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G062000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.65.6e-3185184297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqki 88 
                         lfqrlw++e e+++L+G++df+a++g+   +++ d+  fye +++++sf+++ksql+eK+rrLKkK++ + ++ a++g  ++f+++h+  i
  Seita.5G062000.1.p  85 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYEEIRRRLSFDFTKSQLIEKLRRLKKKYRVCAARvAAQGAAFAFRSAHEGAI 175
                         79************************99877778*************************************998899************** PP

              DUF573  89 felskkiWg 97 
                         +++++ iW+
  Seita.5G062000.1.p 176 YDVARHIWR 184
                         ********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.7E-2786183IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MADDHHPLAA AASSSAGDDD EGTDTDASNS DLANHRDPPP LTDATSAPPT PPAAAASAPE  60
PTGAVPPPPP PQPQSAGAAE DSRRLFQRLW TDEEELLILR GFLDFTARRG TTFASHQYDT  120
GPFYEEIRRR LSFDFTKSQL IEKLRRLKKK YRVCAARVAA QGAAFAFRSA HEGAIYDVAR  180
HIWRPAFKRG EGAAAGDASD EDDINPAAAA AAAALPNATE DGGGGSASAP TPRGRGGRRV  240
RRRTAQELEA PALPATSALV LNDVVQEPLA VPVENLTPAF APPNPVQAPI VSPMAATPSP  300
MTATAGGAAE EVVRTILSPL LREFISSVAV AGQAGLGLGL GMGFGGIGGF DILGLGFGAA  360
GPNPAMPGDE KWRQQQILEL EVYLKRIELV REQVTAALQE LRSSEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G062000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654061e-166BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds.
GenBankJX4284571e-166JX428457.1 Zea mays subsp. mays clone pUT3052 GBP21 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967868.10.0probable transcription factor At3g04930
TrEMBLK3XTC30.0K3XTC3_SETIT; Uncharacterized protein
STRINGSi005179m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.21e-27DNA-binding storekeeper protein-related transcriptional regulator