PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G118700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 419aa    MW: 46798.2 Da    PI: 4.8658
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G118700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.94.9e-33581971128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                         lp+G++F+P+d+el+++ L+k+ ++       +  +e+i++v+    i++++P++Lp  vk++ +  +fF+++ ++y+tg+rk+r+++   
  Seita.4G118700.1.p  58 LPKGVKFDPSDQELLWHLLAKHGKSGIkphpfI--DEFIPTVEgedgICYTHPQKLP-GVKQNGSVSHFFHRTFRAYNTGTRKRRKINtdd 145
                         799************998888755544454332..233555533345**********.667778899******************744446 PP

                 NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+k+vl+ +g++ g+kk++v+y  + +  k+ekt+Wvmh+y+l
  Seita.4G118700.1.p 146 laDVRWHKTGKTKPVLV-EGKHLGCKKIMVLYtsTTKGGKAEKTNWVMHQYHL 197
                         66899************.9999**********5444667788*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-3942216IPR003441NAC domain
PROSITE profilePS5100531.58858216IPR003441NAC domain
PfamPF023658.7E-1559197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MTGTTWIIDG QRFATKIKNA SGPSDPSKQK WMSNPSKECP KCSHVIDNSD VVHQWPGLPK  60
GVKFDPSDQE LLWHLLAKHG KSGIKPHPFI DEFIPTVEGE DGICYTHPQK LPGVKQNGSV  120
SHFFHRTFRA YNTGTRKRRK INTDDLADVR WHKTGKTKPV LVEGKHLGCK KIMVLYTSTT  180
KGGKAEKTNW VMHQYHLGTG EDEKEGEYVV SKLFFQQQFK PGEKNAQELT TADGLESMAA  240
EADIPDFTTL PSEELVGTIQ EIAQNPDHNP YQVNENCEIN IQENAAEETV VLPPSEKPEG  300
GDNPQSQDPK LWEGESQFEL LDSQQLAEGL ALCDEFLLSQ SQTSCGGGDE PRAIKPRLAV  360
YAQLPTEDFK KDLEECQRLE PSDTVNLELD NTTEFRLSQI DFSQDSFTTW AGGKIIDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965197.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK21e-143NAC8_ARATH; NAC domain-containing protein 8
TrEMBLK3XXI10.0K3XXI1_SETIT; Uncharacterized protein
STRINGSi006639m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-144NAC family protein