PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G266500.1.p
Common NameSETIT_024587mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 395aa    MW: 42958.2 Da    PI: 6.8527
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G266500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS256.21.2e-7843878374
                GRAS   8 cAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                         c++a+++g+ ++++a L  +s+l  a+ +gdp+qR+a+ f+eAL +r ++ + ++l+  l  +  ++   + + aa++ f  ++P+l+++ 
  Seita.3G266500.1.p   4 CVTALDAGNIAAVNADLLAMSHLalAACNGDPTQRVAFAFAEALGRRALQsTLPGLSWGLGLQLVQQPAPQYADAARRCFDALCPFLRVAA 94 
                         99********************988999*****************998885889999998777777667777778999************* PP

                GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl..va 183
                          +aNq+I+ a++ e++vH++D++   + QW+ Ll+ ++ +Rpeg+p lR+ +v++    ++  l++t+  L++ A +l+vpf fn++  + 
  Seita.3G266500.1.p  95 SAANQTIVTAMAAEKHVHVVDLGGASPNQWLDLLRLFTaARPEGAPVLRLSVVSE----QEAFLSRTAGLLTQEAVRLHVPFIFNPVrsHI 181
                         *************************************779***************....99*************************98888 PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsles........erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                         +r+++ ++ +L v+ gEal++ + lqlhrl ++++s++         + d++L+++ +lsPk++ ++eqeadhn++s+ +r+++a++yy+a
  Seita.3G266500.1.p 182 DRFSAPDIAALGVHLGEALVITSTLQLHRLIADETSVQLpagphqmtKADALLRVLCDLSPKLMLLTEQEADHNGASLWDRVSNAFNYYVA 272
                         899999*************************6655544333444444599***************************************** PP

                GRAS 267 lfdsleak..lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek.aakqaklllrkvksdg...yrv 351
                         lf+ lea+  +pres +r+ vEr ll++ei+++va  g++rrerhe++++W +r++ aGFkp+p+ ++   ++a l   + + dg   y v
  Seita.3G266500.1.p 273 LFNDLEAGggAPRESVDRAAVERLLLREEIMDIVARDGSSRRERHESMKRWAQRMGVAGFKPAPVMSYdQFEDAGLQALQLAADGtlrYWV 363
                         *****665449****************************************************9865515556655555555677778999 PP

                GRAS 352 eeesgslv.lgWkdrpLvsvSaWr 374
                          +e++s++ ++ +  p++sv+aWr
  Seita.3G266500.1.p 364 RNEDASIIsIYSRMTPIFSVTAWR 387
                         99999999899999*********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.3751362IPR005202Transcription factor GRAS
PfamPF035144.0E-764387IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MQYCVTALDA GNIAAVNADL LAMSHLALAA CNGDPTQRVA FAFAEALGRR ALQSTLPGLS  60
WGLGLQLVQQ PAPQYADAAR RCFDALCPFL RVAASAANQT IVTAMAAEKH VHVVDLGGAS  120
PNQWLDLLRL FTAARPEGAP VLRLSVVSEQ EAFLSRTAGL LTQEAVRLHV PFIFNPVRSH  180
IDRFSAPDIA ALGVHLGEAL VITSTLQLHR LIADETSVQL PAGPHQMTKA DALLRVLCDL  240
SPKLMLLTEQ EADHNGASLW DRVSNAFNYY VALFNDLEAG GGAPRESVDR AAVERLLLRE  300
EIMDIVARDG SSRRERHESM KRWAQRMGVA GFKPAPVMSY DQFEDAGLQA LQLAADGTLR  360
YWVRNEDASI ISIYSRMTPI FSVTAWRPAK KNGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-343338737375GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963818.11e-168PREDICTED: scarecrow-like protein 3
TrEMBLK3ZDF10.0K3ZDF1_SETIT; Uncharacterized protein
STRINGSi024587m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137161330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.19e-68scarecrow-like 3