PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G055700.1.p
Common NameLOC101773457, SETIT_021472mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 578aa    MW: 60556.9 Da    PI: 8.1199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G055700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.8e-16400446455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  Seita.3G055700.1.p 400 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 446
                         5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.41E-18392450No hitNo description
Gene3DG3DSA:4.10.280.102.5E-20393454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-20393456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.006396445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-14400446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-17402451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MGRPRPHLFL QTHPSLASAP AAAAVGGASL FLNCSPTSLL LPPSHAHKQQ QFVLACAPTS  60
NSLSSPLCSP APRHRSSSSV RSILLHLSPR GARMIGPGDE LAELLWDNGP ALRRAPPPFQ  120
PFTCSAAGSS RAHELKRHAA AAAGMASVPL GAHDAGGFPV HDDDDAVPWL HCPVIVDDGD  180
TAPLPPEYCA GLLSEYPGLP GAAPPASPHH GAAVPASRAA PPEAAAKQAP PSAGEGVMNF  240
TFFSRPLQQR PQASAAAAPS NPVESTVVQA ATNRLRSTPL FSEQRMAWLQ PPKAPRATAA  300
GAPPAPQAPL PPELRHGEAA TVTQRRLQPE ARAPDAAAGP AAVTTSSVCS GNGDRSQPKR  360
SSHHQLPDCS VSPDEDLDDE GGATRRSESR SNKRSRTAEV HNLSERRRRD RINEKMRALQ  420
ELIPNCNKID KASMLEEAIE YLKTLQLQVQ MMSMGTGLCV PPMLLPAMQM PHPMAAHFPH  480
LGMGLGFSMG AAAAAFDMAR AAGVHFPCPP MAMPPGPMFG VPGQAMPPPA AAAFAHMATA  540
PPEQMEVAPA RRGAEADQPP VPVVTQGDQK QQHPKQT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404409ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G055700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879582e-73AK287958.1 Oryza sativa Japonica Group cDNA, clone: J075053F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960433.20.0transcription factor APG
SwissprotQ0JNI92e-88PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLK3Z4X60.0K3Z4X6_SETIT; Uncharacterized protein
STRINGSi021472m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-32phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]