PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G033600.1.p
Common NameLOC101767014, SETIT_021959mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 470aa    MW: 50696.9 Da    PI: 6.3645
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G033600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.6e-15129188155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Seita.3G033600.1.p 129 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 188
                         57*******************666664477446*************************98 PP

2AP248.22.7e-15231282155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Seita.3G033600.1.p 231 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 282
                         57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-12129188IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-17129197IPR016177DNA-binding domain
CDDcd000181.17E-21129198No hitNo description
PROSITE profilePS5103219.322130196IPR001471AP2/ERF domain
SMARTSM003802.8E-29130202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-16130197IPR001471AP2/ERF domain
PRINTSPR003672.4E-6131142IPR001471AP2/ERF domain
PfamPF008475.8E-10231282IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-18231292IPR016177DNA-binding domain
CDDcd000181.22E-24231292No hitNo description
SMARTSM003802.1E-33232296IPR001471AP2/ERF domain
PROSITE profilePS5103219.348232290IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-18232290IPR001471AP2/ERF domain
PRINTSPR003672.4E-6272292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDTSHHYPWL NFSLAHHCDL EEEERGAAAE LAAIAGAAPP PKLEDFLGGG AAGGGPVPGA  60
ETAAAEMYDS ELKFIAAGFL PSGGAGAAAP SPSPVSSLDQ ADPKLALPAA AAPAPEQRKA  120
VDSFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD  180
LAALKYWGPS TTTNFPVAEY EKELEEMKNM TRQEFVASLR RKSSGFSRGA SIYRGVTRHH  240
QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE ISRYNVESII  300
SSNLPIGSMS ASGGRSSKAL ECTPSNSSDA MPVEASTTQQ FAALPVKYDQ QDYLSMLALQ  360
HHQQGNLQGL GFSLYSSGVN LDFANSHGTA SSMANCYANG ASHEQHQHHQ QLQDHQQDQA  420
QQSSNSCSSP PFAMPIAFSG SYESSMTPGP FGYSYPNVAA FQTPIYGME*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118910.0AK111891.1 Oryza sativa Japonica Group cDNA clone:J033072A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960245.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-141AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLK3Z5Z10.0K3Z5Z1_SETIT; Uncharacterized protein
STRINGSi021959m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-123AINTEGUMENTA-like 5