PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G202000.1.p
Common NameLOC101768856, SETIT_033183mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 267aa    MW: 28268.2 Da    PI: 6.122
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G202000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.61.1e-34103174366
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........s 66 
                          ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ lt+         +
  Seita.2G202000.1.p 103 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLTEPsqrtggggG 174
                         689**********************************************************98444444431 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.922104162IPR017887Transcription factor TCP subgroup
PfamPF036343.1E-33104167IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MLPYPNLHHF GVSQEPPHPN PTGFPIMLPP AAHLDQHYAD HFFPSHAHQF NSETLEAVLR  60
PPRAAPGCEA AVTAPQGGGR NGAAAAAAGG GGQGHARARK RPFRTDRHSK IRTAQGVRDR  120
RMRLSLDVAR DFFALQDRLG FDKASKTVDW LLTQSKPAID RLTEPSQRTG GGGGVDAACL  180
SSPTSGAPDG SGKRGGVAEK AGARNGGSAF MEHGCELDRL VSAAPVLGEY YYAGLSEMMS  240
NNGGEEGDDD GEYEEDGDDF LDGMQY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G202000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956790.10.0transcription factor TB1
TrEMBLK4A2T10.0K4A2T1_SETIT; Uncharacterized protein
STRINGSi033183m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.12e-27TCP family protein