PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G376200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 229aa    MW: 23239.1 Da    PI: 10.7658
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G376200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1264.1e-3930127289
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.. 88 
                         a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  +++s +ss+s+ + +  
  Seita.1G376200.1.p  30 AVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSSSSQTTTApf 120
                         789*************************************************************999998886655555555554433345 PP

                 TCP  89 ......k 89 
                               +
  Seita.1G376200.1.p 121 ilgkrvR 127
                         5554441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-3336115IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2093690IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTTRPAQGGA AADKQLVPAS NGNGNGNALA VRKAPSKDRH SKVDGRGRRI RMPIICAARV  60
FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPASF STSSPSSLRS SSSQTTTAPF  120
ILGKRVRGAD DADAAEPTVA APAPGFWALP ARADFGQLWS FAAAPEMMVA AAAAAAAPAM  180
AGEASAARVG NYLPMAQGNL NLLASFSGGP APTAATATVG RAEEETAR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G376200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2407981e-114AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBankAP0047761e-114AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBankAP0149581e-114AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-114CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954492.11e-161transcription factor TCP7-like
SwissprotQ9FMX22e-76TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A368PTE01e-160A0A368PTE0_SETIT; Uncharacterized protein
STRINGOMERI02G35320.11e-95(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-46TCP family protein