PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G357300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 109aa    MW: 12336.1 Da    PI: 10.1586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G357300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.42.2e-175096455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  Seita.1G357300.1.p 50 VHNLSEKRRRSRINEKMKALQTLIPNS-----SKTDKASMLDDAIEYLKQLQ 96
                        6*************************8.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-2043104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.9814695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-1349100No hitNo description
PfamPF000105.7E-155096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1950104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-1852101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MDAQQLDLIL RHHHQSMANV CESEDALGSS ESEPARPARP RGKRSRAAEV HNLSEKRRRS  60
RINEKMKALQ TLIPNSSKTD KASMLDDAIE YLKQLQLQVQ VSKQMLRC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0640561e-122BT064056.1 Zea mays full-length cDNA clone ZM_BFc0135E23 mRNA, complete cds.
GenBankBT0333821e-122BT033382.1 Zea mays full-length cDNA clone ZM_BFb0041N16 mRNA, complete cds.
GenBankKJ7269881e-122KJ726988.1 Zea mays clone pUT3689 bHLH transcription factor (bHLH168) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954276.14e-65PREDICTED: transcription factor SPATULA
SwissprotO805364e-28PIF3_ARATH; Transcription factor PIF3
SwissprotQ9FUA41e-28SPT_ARATH; Transcription factor SPATULA
TrEMBLK3YU164e-65K3YU16_SETIT; Uncharacterized protein
TrEMBLK3YUQ71e-65K3YUQ7_SETIT; Uncharacterized protein
STRINGSi017762m1e-64(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-23bHLH family protein