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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.1G273300.1.p | ||||||||
Common Name | LOC101761523, SETIT_016627mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GRAS | ||||||||
Protein Properties | Length: 637aa MW: 66123.8 Da PI: 9.7235 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 307.7 | 2.7e-94 | 272 | 636 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++lL e A av++g+ ++a a La l+++++p+gd+ qRl+a+++ AL++r+ ++++ +e e+ aa +l+++vsP++ Seita.1G273300.1.p 272 RQLLSETAAAVADGNRTAAAAHLAALKTTVNPRGDAEQRLVAMMAAALSSRIGP--------PSSQQLAELCGPEQRAACQLLHDVSPCFG 354 689**************************************************9........333333333366777899*********** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefn 179 ++ aN aIl+av+g++++H iDfd+s +Q +aL+qaLasR+ l++T+v++p+s +++l +tg+rL++ A++ g++f+fn Seita.1G273300.1.p 355 LALHGANLAILDAVAGQRAIHLIDFDVSV-AQHIALIQALASRRVAGTCLKVTAVADPASPftpaLTQALAATGQRLKRHAQQAGLEFRFN 444 ***************************96.79*************************99888998999*********************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 + v+ r +++ ++L ++pgEalaVnl+++l r+ desvs +++rde+L+ v+ l P+vv +veqe+++n++++++rf++a+ +y a+++s Seita.1G273300.1.p 445 A-VSCRAGEIDASRLGCEPGEALAVNLAFALSRVADESVSPANPRDELLRRVRALGPRVVALVEQELNTNTAPLAARFADACAHYGAVLES 534 *.7999************************************************************************************* PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 l+a+l+r+s +r+ E++ l+++++n++a eg +r er+e ++kWr+r+++aG++pv++++ +a+ +k+ l + g+ v+ +sg l g Seita.1G273300.1.p 535 LDATLARDSPQRARAEEA-LANKATNALAREGPDRMERCEVFGKWRARFGMAGLRPVAIGQGIADRVKARLGHAR-PGFDVKLDSGRLGVG 623 ******************.99**************************************************9998.9************** PP GRAS 362 WkdrpLvsvSaWr 374 W++r ++++SaWr Seita.1G273300.1.p 624 WMGRVVTVASAWR 636 ************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.871 | 245 | 617 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.3E-92 | 272 | 636 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MEPAGAPWCD PRRGYGYGYG GGSVARAPGV RRQPQQPPRQ DAAAVATGGV LKRSLGEVER 60 WQQALYLRAV RQRVTAQAQA AHPPIDIGAV LARAASRSSG FSGPPSAGFA GLSPQPSSTL 120 SSLTTGSHMA TPQPQPPMQQ LLRRQMAAAP PAPPQAAQAV VARGPAARPA TAREMVLLHE 180 LEKKLLGDDD DGDAEAAGSA CGSTVTSSAW GDTMQELNSI TAASLPSLPM ASATNNYNNT 240 VPITRSPTNS ASSSTASSTA SSSPPTSAAS SRQLLSETAA AVADGNRTAA AAHLAALKTT 300 VNPRGDAEQR LVAMMAAALS SRIGPPSSQQ LAELCGPEQR AACQLLHDVS PCFGLALHGA 360 NLAILDAVAG QRAIHLIDFD VSVAQHIALI QALASRRVAG TCLKVTAVAD PASPFTPALT 420 QALAATGQRL KRHAQQAGLE FRFNAVSCRA GEIDASRLGC EPGEALAVNL AFALSRVADE 480 SVSPANPRDE LLRRVRALGP RVVALVEQEL NTNTAPLAAR FADACAHYGA VLESLDATLA 540 RDSPQRARAE EALANKATNA LAREGPDRME RCEVFGKWRA RFGMAGLRPV AIGQGIADRV 600 KARLGHARPG FDVKLDSGRL GVGWMGRVVT VASAWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-40 | 267 | 636 | 1 | 375 | GRAS family transcription factor containing p |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957074 | 0.0 | EU957074.1 Zea mays clone 1581966 chitin-inducible gibberellin-responsive protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953458.1 | 0.0 | PREDICTED: scarecrow-like protein 8 | ||||
TrEMBL | K3YQT3 | 0.0 | K3YQT3_SETIT; Uncharacterized protein | ||||
STRING | Si016627m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4188 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 6e-97 | SCARECROW-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Seita.1G273300.1.p |
Entrez Gene | 101761523 |