PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G230500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 246aa    MW: 26948.5 Da    PI: 10.751
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G230500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP71.33.1e-2235148189
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec....eaessss 80 
                         aag+kd+h k+ T  g+RdRRv ls+++a++f+d qd+L + ++sk+i WL++    ai+el+++       ++++as+     ++++ s 
  Seita.1G230500.1.p  35 AAGGKDQHNKVVTVWGLRDRRVQLSVPTAIQFYDSQDRLNVAQPSKAIKWLIRT---AIDELPSLdcsftlpGTDAASSPpaagDNVEVST 122
                         6899************************************************86...6888888877799994444433333222222222 PP

                 TCP  81 sasnsssg...................k 89 
                         s+   +++                   +
  Seita.1G230500.1.p 123 SKT--NKSsvlslantparprtvkaptR 148
                         222..22223444444332322222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-2037191IPR005333Transcription factor, TCP
PROSITE profilePS5136919.153896IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEEIGMECTA YKRPRTALDG GSAAAWRMCQ VARAAAGGKD QHNKVVTVWG LRDRRVQLSV  60
PTAIQFYDSQ DRLNVAQPSK AIKWLIRTAI DELPSLDCSF TLPGTDAASS PPAAGDNVEV  120
STSKTNKSSV LSLANTPARP RTVKAPTREA TRPSGWREWG EPGRPRMSAA KRPDQGGSAA  180
GGRQWREERK RWSERERPVV HTVYGAAHHF RLQPGKDSSS MPPVSIDFVK NLPAEAGRMS  240
FLWTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-144394155Putative transcription factor PCF6
5zkt_B3e-144394155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G230500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955073.14e-83transcription factor PCF8
SwissprotA2ZMR96e-42PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A368PND01e-180A0A368PND0_SETIT; Uncharacterized protein
STRINGSi019114m1e-142(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.25e-23TCP family protein