PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G227100.1.p
Common NameSETIT_020045mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 476aa    MW: 52300.7 Da    PI: 10.9799
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G227100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573933.2e-29221318297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                         ++ r+ws eDei++L +l++++ak+g+   + +d+ ++++++++++ +++s++ql++K+rrLK+K+k   ++a++g++p++ ++h+++++e
  Seita.1G227100.1.p 221 RPPRVWSPEDEITILSALVECRAKKGQlpASIQDTGKVHSQISGQLTANASTTQLSDKVRRLKHKYKLLFTRARNGRDPDLPTQHERDVYE 311
                         578************************777888********************************************************** PP

              DUF573  91 lskkiWg 97 
                         lskk+Wg
  Seita.1G227100.1.p 312 LSKKVWG 318
                         ******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.9E-28223318IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
SFRRRRRNSP SPIPSRSPSR SRSRSRSRSK TPPPNLRPNA AALSSTPTSA GADFAAASDS  60
DADAGGGRGR VSSPRRRDRK GAPRDRLDSD ADADASAGGR APSPRRRRKR SPSFHSDSDA  120
DAGGRVPSPR RNRERTPRLH SDSDSDNSAA AAGSEDDGAG AGDASSLPRA RRSSRIETSN  180
IKPVSTRPME APRRAPAGSS QRRSKRRHSS PGRASPEHQK RPPRVWSPED EITILSALVE  240
CRAKKGQLPA SIQDTGKVHS QISGQLTANA STTQLSDKVR RLKHKYKLLF TRARNGRDPD  300
LPTQHERDVY ELSKKVWGFK SGDILGGSHA YEDTGDAESN EEQEIEESDD AMENGWEHHE  360
RPGKKPKAFR FENGNGNALA AVGRASHGNG SGRDDAEKGK QMYPYLWEAV AELSKEHPSG  420
PIFRKAFGVL EKSKAQAMEE KLRKFRMSEI RQQLHRMDLM KETMRMVLDA LEGSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11927RSRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700838.10.0PREDICTED: serine/arginine repetitive matrix protein 1-like
TrEMBLK3Z0H90.0K3Z0H9_SETIT; Uncharacterized protein
STRINGSi020045m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.19e-14DNA-binding storekeeper protein-related transcriptional regulator