PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G223700.1.p
Common NameSETIT_017194mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 311aa    MW: 32592.1 Da    PI: 8.9402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G223700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.4e-13246291655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  Seita.1G223700.1.p 246 SIAERERRTRISEKLRKLQELVPHM----DKQTSTADMLDLAVEHIKGLQ 291
                         689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.405240290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15243304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.26E-12244295No hitNo description
Gene3DG3DSA:4.10.280.101.5E-14245303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-13246296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-10246291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRRFLPARGG GGEPSSSSSS GGHQRRELAG EAGLRYDGGG DISLGHGHDA GGGHRRHHHH  60
QLGGGGGGQA AERQQQDDGS MDMLARHSSS PAGFFSNLVV DNGYPGSKGA GGSGGAEASG  120
SGRKMKPSQF NFTRPQPGGA AGHLSQISED GAFPPGLVGD RAGESSSSGG GAAAARSFSG  180
GFSIVGPWEE SRDIIATLGA YDSQFSGAMA GTALEMAGMD RYMQLQPDQM PFKVRAKRGC  240
ATHPRSIAER ERRTRISEKL RKLQELVPHM DKQTSTADML DLAVEHIKGL QSELQALKHE  300
QEKCTCCRKR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G223700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547251e-123EU954725.1 Zea mays clone 1479278 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953019.10.0transcription factor bHLH128
SwissprotQ8H1021e-50BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A368PP150.0A0A368PP15_SETIT; Uncharacterized protein
TrEMBLK3YSF00.0K3YSF0_SETIT; Uncharacterized protein
STRINGSi017194m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]