PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676790596
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 321aa    MW: 35125.7 Da    PI: 5.8456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676790596genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20151200255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  676790596 151 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAFKLRG 200
                59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.46E-35150210No hitNo description
SuperFamilySSF541712.09E-23151209IPR016177DNA-binding domain
PROSITE profilePS5103223.565151208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-32151209IPR001471AP2/ERF domain
SMARTSM003804.3E-40151214IPR001471AP2/ERF domain
PRINTSPR003672.9E-11152163IPR001471AP2/ERF domain
PfamPF008479.4E-15152200IPR001471AP2/ERF domain
PRINTSPR003672.9E-11174190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009415Biological Processresponse to water
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEGTPMADFF SNGHGGELME ALQPFYKSAS TSAADSAFAS SNAAFASAPN DHFSSSYYNS  60
QSQNASFFPT TQSYPDIYSG SMTYPASFGL DIQQPEQNYQ SHLHYQNDFT YTPQDSNHHC  120
MLNFIDPNTT GFLTQPGQAP SPGSVPKPAK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT  180
FDTAEEAALA YDRAAFKLRG DSARLNFPAL RYQTGSAPSD SGEYYGPIQA AVDAKLEAIL  240
AEPKNQPGKT ETKKRAKAAP SSVKQAAPQQ HSGSGESDGS GSPTSDMMAS EMCVETPMPW  300
NDNFMLGKCP SYEIDWASIL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21150208160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-21149215369ATERF1
3gcc_A3e-21149215369ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00182DAPTransfer from AT1G36060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676790596
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746354.10.0ethylene-responsive transcription factor ERF055-like
SwissprotQ9SKW51e-165ERF55_ARATH; Ethylene-responsive transcription factor ERF055
TrEMBLA0A078IDT31e-179A0A078IDT3_BRANA; BnaAnng09570D protein
TrEMBLA0A397ZID81e-179A0A397ZID8_BRACM; Uncharacterized protein
TrEMBLM4FH031e-179M4FH03_BRARP; Uncharacterized protein
STRINGBra040381.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151241518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.11e-136ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]