PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789924
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 336aa    MW: 36980 Da    PI: 9.8509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789924genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.99.7e-051501901055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                + R +r+ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  676789924 150 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 190
                668889999*********999.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.877140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-11143200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-4148194No hitNo description
Gene3DG3DSA:4.10.280.105.5E-7148196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGDTTEDQDG RAMVEAAGGP SFSELLMLSD GFLSSSDHHR EDNSGDGGED SFGFVFSGTN  60
GSKMLCFSGD CQNGDESLFL EPSLTSGVSV SDPSCTVNTC KNSNDTCADE KSTKSSNKKR  120
TGSISGQNMD HNPTKKCKRN QDKSSVGIAK VRKERLGERI AALQQLVSPY GKTDAASVLH  180
EAMGYIKFLQ DQIQVLCSPY LINYSLDGGV VTGDVTPGKK VNDLRSRGLC LVPVSSTVHV  240
ENSNGADFWS PATMGKSTTV QKLSSRRPFC IRLQRRKKMR RKKMRTKKLT TKNKITYTLI  300
VKLTIEYLTT RKLMTKNRTT KQMTTKHLNT EELNIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273280QRRKKMRR
2275288RKKMRRKKMRTKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789924
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145780.11e-166PREDICTED: transcription factor bHLH113 isoform X1
SwissprotQ9LT671e-141BH113_ARATH; Transcription factor bHLH113
TrEMBLA0A078I5R41e-165A0A078I5R4_BRANA; BnaA05g20570D protein
TrEMBLA0A397ZLA21e-165A0A397ZLA2_BRACM; Uncharacterized protein
TrEMBLM4E0Y11e-165M4E0Y1_BRARP; Uncharacterized protein
STRINGBra022428.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74022234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-134bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]