PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676786474
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TCP
Protein Properties Length: 353aa    MW: 40028.2 Da    PI: 4.8046
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676786474genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.75.8e-40862342129
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec.........eaesssssasnsssg 88 
                a+kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aikel++     s    ++          e+e++   ++    +
  676786474  86 AVKKDRHSKIHTAQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRRAIKELVQEkklnS----NDDdfgniggevEEEEEDDDDDD---D 178
                89**************************************************************65542....22222334432222222222222...1 PP

        TCP  89 ..............kaaksaa.kskksqksaasalnlak.esrakarararertrek 129
                              ++   +  k +k +k+ +  +n++   sraka+ +a+e tre 
  676786474 179 geksfvygsspkscEEVVCEVeKAEKGEKKIE-LSNISSkGSRAKASGKAKEITREM 234
                34477888888555333333312233333333.344443488899999999999885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-3987234IPR005333Transcription factor, TCP
PROSITE profilePS5136935.74388146IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSSSNNDYNN NGNNGVYPLS LYLASLSGHH DIIRNPYINH QSTEAPGQMV SAMPESLVNY  60
MSFNSNSAVN QQGFEIPEVS REIKKAVKKD RHSKIHTAQG LRDRRVRLSI GIARQFFDLQ  120
DMLGFDKASK TLDWLLKKSR RAIKELVQEK KLNSNDDDFG NIGGEVEEEE EDDDDDDDGE  180
KSFVYGSSPK SCEEVVCEVE KAEKGEKKIE LSNISSKGSR AKASGKAKEI TREMTYDHPE  240
SISEITQTEI MDPFKRSIII NEGEDMTRSF YKEATQEFNN QECILTKTKV NLPTNTDLSY  300
NQHYGTFMLK DHGSSNNYNT ILPQNLDFDY DQNPFIDQPF CAVTNTSFSR GFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1493146154Putative transcription factor PCF6
5zkt_B1e-1493146154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676786474
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127539.10.0PREDICTED: transcription factor TCP1-like
SwissprotQ9FYG71e-155TCP1_ARATH; Transcription factor TCP1
TrEMBLM4EYW80.0M4EYW8_BRARP; Uncharacterized protein
STRINGBra034010.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-132TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]