PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676783708
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 226aa    MW: 25187.1 Da    PI: 7.7607
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676783708genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-1971121255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAa+ +++a+ kl+g
  676783708  71 HYRGVRRRP-WGKYAAEIRDP---NkKGVRVWLGTFDTAIEAARGYDRAAFKLRG 121
                7********.**********9...4345*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3170130IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2271130IPR016177DNA-binding domain
PROSITE profilePS5103224.19771129IPR001471AP2/ERF domain
SMARTSM003806.3E-3671135IPR001471AP2/ERF domain
PfamPF008476.2E-1371121IPR001471AP2/ERF domain
CDDcd000183.27E-3171129No hitNo description
PRINTSPR003676.3E-137283IPR001471AP2/ERF domain
PRINTSPR003676.3E-13111131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MASSQQQQQQ DQSALDLITQ HLLTDFPSLE TFVSSIHQST TTSTLSQRKP SLATIAVPIT  60
EPLAQEDDQR HYRGVRRRPW GKYAAEIRDP NKKGVRVWLG TFDTAIEAAR GYDRAAFKLR  120
GSKAILNFPL EAGKYEDSED NNDNKTVALK AKRKRQVTED EGHETTLSSH KAVKREETES  180
QSEACPLTPS SWMGFWDGVD GKGMGLFTVP PLSPYPSLGH SQLSVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2870130161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676783708
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607145.11e-140PREDICTED: ethylene-responsive transcription factor ERF105
RefseqXP_013671087.11e-140ethylene-responsive transcription factor ERF105
SwissprotQ8VY901e-121EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A0D3EA071e-139A0A0D3EA07_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QP331e-139A0A3N6QP33_BRACR; Uncharacterized protein
TrEMBLA0A3P6DJP21e-139A0A3P6DJP2_BRAOL; Uncharacterized protein
STRINGBo9g100030.11e-140(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-119ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]