PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676781674
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 241aa    MW: 26632.5 Da    PI: 5.0075
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676781674genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-1858108155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  676781674  58 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 108
                68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-1358108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-3259117IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2159117IPR016177DNA-binding domain
SMARTSM003803.4E-3659122IPR001471AP2/ERF domain
PROSITE profilePS5103223.45959116IPR001471AP2/ERF domain
CDDcd000182.57E-3260118No hitNo description
PRINTSPR003672.5E-106071IPR001471AP2/ERF domain
PRINTSPR003672.5E-108298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVASASEGTS VEEYYSRHSE IVTHLPNSAS DSVIHESKEE QNENAKKTKR VRDSGKHPVY  60
RGVRMRNWGK WVSEIREPRK KSRIWLGTFP TPEMAARAHD VAALSIKGTS AILNFPELAD  120
SFPRPATLSP RDIQTAALKA AHMEPTTSFT SSSSSSSSST SSLESLVLVM DLSRTESEEL  180
DEIVELPSLG ASYDVDSATV GNEFVFSDSV DYCLYPPPWG QWSEDSYGII PSFNHGLSWN  240
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18571161272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676781674
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013666100.11e-140dehydration-responsive element-binding protein 3 isoform X1
RefseqXP_013666101.11e-140dehydration-responsive element-binding protein 3 isoform X2
SwissprotQ9LYD31e-122DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1J3G4S81e-140A0A1J3G4S8_NOCCA; Dehydration-responsive element-binding protein 3
TrEMBLA0A1J3H0D81e-140A0A1J3H0D8_NOCCA; Dehydration-responsive element-binding protein 3
STRINGBo9g170060.11e-139(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-122ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]