PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676779766
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 298aa    MW: 34192.7 Da    PI: 4.672
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676779766genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.4e-08175219655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  676779766 175 SIAARERRRRIADKTHELSKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 219
                677899*****************86.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-11162231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.62169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-10173234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5175219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-9175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-4191222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSSMDCLSHF FDWDPPSQLQ DCFIPDMDTI IPETDSFFFQ SQPPLQFHQP LFEEEAPSQS  60
LLELTHLDSF CDQFLPPQEM CLPYPKTELF DETDNLDSFL AASKRQKLVN SSYHCNTHNH  120
FSSTNPNFFN YYDELDFVPK ASMFPEFRVP DFPLAFKAGR GDEDGTKKPT LSTQSIAARE  180
RRRRIADKTH ELSKLIPGGQ KLNTAEMFQA AAKYVKFLQS QVGILQMMQT TKKMHIADVE  240
IETRVLLESQ AIQEKLSTDE VCLVPCEMVR DLASEESIRR NPMISREINK LLSADLAN
Cis-element ? help Back to Top
SourceLink
PlantRegMap676779766
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410635.21e-168transcription factor bHLH53
SwissprotQ84RD01e-149BH053_ARATH; Transcription factor bHLH53
TrEMBLV4MHR81e-169V4MHR8_EUTSA; Uncharacterized protein
STRINGXP_006410635.11e-170(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-136bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]