PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676779274
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 603aa    MW: 68328.5 Da    PI: 9.7617
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676779274genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-182171155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
               ++++GVr++  +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  ++g
  676779274 21 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFNTAEEAARAYDQAAVLMNG 71
               59*****999.**********8.....334*********************977765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.44E-312180No hitNo description
PROSITE profilePS5103221.6542279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-312279IPR001471AP2/ERF domain
PfamPF008474.4E-112267IPR001471AP2/ERF domain
SMARTSM003803.7E-392285IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-192280IPR016177DNA-binding domain
PRINTSPR003679.7E-102334IPR001471AP2/ERF domain
PRINTSPR003679.7E-104561IPR001471AP2/ERF domain
PfamPF031519.8E-23274560IPR004853Sugar phosphate transporter domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MSEKHRDIKN PNYNIKMVHS KKFRGVRQRQ WGSWVSEIRH PLLKRRVWLG TFNTAEEAAR  60
AYDQAAVLMN GQSAKTNFPV IKSNGSDSPD VNSPLRSPKA LSELLNAKLR KNCKDQTPYL  120
TCLRLDNDSS NIGVWQKRAG SKTTQNWVKL VELGDGVKVR AGDIGTSKMK ENDEVEEEDQ  180
MAMQMIEELL NWTCPASSSN SERRPTRHDK KVQMEGKKSN WLIKEEWKLL IYHNRRLRRR  240
TTVQREHLYQ ELLGMGKGGS LSEGVIKNII LSYTYVAIWI FLSFTVIVYN KYILDKKMYD  300
WPFPISLTMI HMSFCSTLAF LLIKVFKFVE PVSMSRDTYV RSVVPIGALY SLSLWLSNSA  360
YIYLSVSFIQ MLKALMPVAV YSIGVLFKKE GFKSETMVNM LSISFGVAIA AYGEARFDVW  420
GVILQLGAVA FEATRLVMIQ ILLTSKGITL NPITSLYYVA PCCLAFLFVP WIVVEFPILR  480
DTSSFHFDFL VFGTNSFCAF ALNLAVFLLV GKTSALTMNV AGVVKDWLLI AFSWSVIKDT  540
VTPVNLFGYG IAFLGVAYYN HAKLQALKAK EAQKSAQQAD EETGRLLEDK EGIEGGRKNE  600
PQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1722791472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676779274
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0062580.0AC006258.1 Arabidopsis thaliana BAC F18G18 from chromosome V near 60.5 cM, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_568469.10.0Nucleotide-sugar transporter family protein
SwissprotQ3E6T00.0PT525_ARATH; Probable sugar phosphate/phosphate translocator At5g25400
TrEMBLA0A1W6AJZ80.0A0A1W6AJZ8_ARATH; UDP-Arabinofuranose Transporter 1 (Fragment)
STRINGAT5G25400.10.0(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.21e-102ERF family protein
Publications ? help Back to Top
  1. Bakker H, et al.
    Molecular cloning of two Arabidopsis UDP-galactose transporters by complementation of a deficient Chinese hamster ovary cell line.
    Glycobiology, 2005. 15(2): p. 193-201
    [PMID:15456736]
  2. Bock KW, et al.
    Integrating membrane transport with male gametophyte development and function through transcriptomics.
    Plant Physiol., 2006. 140(4): p. 1151-68
    [PMID:16607029]
  3. Rautengarten C, et al.
    The Golgi localized bifunctional UDP-rhamnose/UDP-galactose transporter family of Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(31): p. 11563-8
    [PMID:25053812]
  4. Rautengarten C, et al.
    The elaborate route for UDP-arabinose delivery into the Golgi of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(16): p. 4261-4266
    [PMID:28373556]