PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676777778
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 438aa    MW: 47932.9 Da    PI: 6.7332
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676777778genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.7e-05312357555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++  r R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  676777778 312 ASKKPRVRKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 357
                5667799999**************98.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.544307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.59E-6310361No hitNo description
SMARTSM003539.8E-4311362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-11313369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-8321364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDSANLHQLQ DQLQLVGSSS SSSSLENNSD PSCYGASSVH QWSPGGISLN SVSLSHNFNN  60
EMLNTRDHNN DNNTSECMSL SNIHNPSLIP QQDFSLQWSH DQSSYHHHEG IHKIKEELSS  120
STTSDHQQGM PKFTDMLTNP GITNYLKINE HKDYTKKLLL NSISSGFPIN GDYSSSLPSS  180
SSSNSSSSPS SQSHRGSFSQ IYPSVNISSL SESRRMSNIP RPFDMNMQVL DGRLFEGNVL  240
VPPLNSQEIS NLEMSRGSYP PFGLPFPHHL QQTLHHPSSS STHQMEMYSN EPQPSEGKRH  300
NFLMATKAGE NASKKPRVRK EKLGDRIAAL QQLVSPFGKT DTASVLMEAI GYIKFLQSQI  360
ETLSVPYMRS SRNRPGKASQ LGSLPQEGDD EEKRDLRSRG LCLVPLSCMT YVTGDGGDGG  420
GGVGSGFWPT PPGFGGGT
Cis-element ? help Back to Top
SourceLink
PlantRegMap676777778
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895550.0AC189555.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478109.10.0PREDICTED: transcription factor bHLH110 isoform X1
SwissprotQ9SFZ30.0BH110_ARATH; Transcription factor bHLH110
TrEMBLA0A1J3EMR70.0A0A1J3EMR7_NOCCA; Uncharacterized protein
STRINGBostr.15697s0089.1.p0.0(Boechera stricta)
STRINGXP_010478109.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]