PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676777462
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 144aa    MW: 16265.4 Da    PI: 9.5837
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676777462genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-191160255
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+ + ++
  676777462 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAAHNHHN 60
               7********.**********883....5*********************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-231177IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-191168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-251167IPR001471AP2/ERF domain
PROSITE profilePS5103219.6121168IPR001471AP2/ERF domain
CDDcd000183.38E-241155No hitNo description
PfamPF008471.8E-121156IPR001471AP2/ERF domain
PRINTSPR003673.9E-111223IPR001471AP2/ERF domain
PRINTSPR003673.9E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAAHNHHN  60
QYQHLWFSAP PPLPVPDHHP HHRIFLRTGV LNDKTSDFPS TETPAAATSS PRVLGFPMMS  120
TSPPSPTTRR GLAIDLNEPP PLWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17767162ATERF1
3gcc_A1e-17767162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676777462
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0558839e-54AB055883.1 Arabidopsis thaliana AtERF12 gene for ERF domain protein12, complete cds.
GenBankAC0101559e-54AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankAY0997989e-54AY099798.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds.
GenBankBT0026049e-54BT002604.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds.
GenBankCP0026849e-54CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109734.16e-71PREDICTED: ethylene-responsive transcription factor 12
RefseqXP_013655107.16e-71ethylene-responsive transcription factor 12
SwissprotQ94ID69e-68ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A397YMY41e-69A0A397YMY4_BRACM; Uncharacterized protein
TrEMBLA0A3P6EN521e-69A0A3P6EN52_BRAOL; Uncharacterized protein
TrEMBLM4D3281e-69M4D328_BRARP; Uncharacterized protein
STRINGBra010881.1-P2e-70(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-63ERF domain protein 12