PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676774626
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 188aa    MW: 21240.1 Da    PI: 6.682
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676774626genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-18655255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a++ ++g
  676774626  6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAALLMNG 55
               89****999.**********8.....334**********************98877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-32564IPR001471AP2/ERF domain
CDDcd000188.19E-23665No hitNo description
PfamPF008471.2E-11655IPR001471AP2/ERF domain
SMARTSM003808.5E-39669IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-20664IPR016177DNA-binding domain
PROSITE profilePS5103222.221663IPR001471AP2/ERF domain
PRINTSPR003672.8E-10718IPR001471AP2/ERF domain
PRINTSPR003672.8E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MVHSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA LLMNGQNAKT  60
NFPVVKSEDG SDNVHDVNSP LMSPKSLSEL LNAKLRKSCK DLTPSLTCLR LDTVSSHIGV  120
WQKRAGSKTS PNWVMRLELG NVVNESAHDL GLTTVKKQDV EKEDDVEEAI VDEDQLAMEM  180
IEELLNWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-166631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676774626
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608650.0AY560865.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g11190) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610191.11e-115PREDICTED: ethylene-responsive transcription factor SHINE 2
SwissprotQ9LFN71e-112SHN2_ARATH; Ethylene-responsive transcription factor SHINE 2
TrEMBLA0A0D3EGA31e-113A0A0D3EGA3_BRAOL; Uncharacterized protein
STRINGBo9g171490.11e-114(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.11e-102ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Liu Y, et al.
    Functional Characterization of Populus PsnSHN2 in Coordinated Regulation of Secondary Wall Components in Tobacco.
    Sci Rep, 2017. 7(1): p. 42
    [PMID:28246387]
  3. Kumar V, et al.
    A part of the upstream promoter region of SHN2 gene directs trichome specific expression in Arabidopsis thaliana and heterologous plants.
    Plant Sci., 2017. 264: p. 138-148
    [PMID:28969794]