PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676770562
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 161aa    MW: 17893.6 Da    PI: 10.8492
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676770562genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-2080134155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +g+WvAeIr+ +   g+r r +lg+f+taeeAa a+++a+ +l g
  676770562  80 KKFRGVRQRP-WGKWVAEIRCGRAlKGRRDRLWLGTFDTAEEAALAYDNAAVQLIG 134
                59********.**********54433367**********************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.78E-2580141No hitNo description
Gene3DG3DSA:3.30.730.101.2E-2781141IPR001471AP2/ERF domain
PROSITE profilePS5103221.15381142IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1981142IPR016177DNA-binding domain
PfamPF008478.0E-1481134IPR001471AP2/ERF domain
SMARTSM003801.9E-3081148IPR001471AP2/ERF domain
PRINTSPR003672.2E-118293IPR001471AP2/ERF domain
PRINTSPR003672.2E-11108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MIPRLVQFIQ RVLEKRLRAS TLEFGAVMDF LLSRHVASDE IVIDPSSDSD NKLDVSKTRF  60
KIRIPAEFLK AAATTAKGKK KFRGVRQRPW GKWVAEIRCG RALKGRRDRL WLGTFDTAEE  120
AALAYDNAAV QLIGPHAPTN FGFPTDNQQL VDGASAVARG A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-16811411471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676770562
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104928.11e-69PREDICTED: ethylene-responsive transcription factor ERF070-like
RefseqXP_022544748.12e-69ethylene-responsive transcription factor ERF070-like
SwissprotQ9C9952e-62ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A397YPD71e-68A0A397YPD7_BRACM; Uncharacterized protein
STRINGBra003936.1-P4e-69(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.14e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]