PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676768882
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22406.8 Da    PI: 9.4718
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676768882genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.29e-181152344
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
               i+n+s r+ tf kR  gi+KK +ELS+LC+++++ ii+s+++
  676768882 11 ISNHSSRKATFKKRNRGIMKKVKELSTLCGIDACAIIYSPDD 52
               9**************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.722149IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-22160IPR002100Transcription factor, MADS-box
CDDcd002661.02E-31385No hitNo description
PRINTSPR004041.6E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-24395IPR002100Transcription factor, MADS-box
PfamPF003191.4E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MPRKKLELAL ISNHSSRKAT FKKRNRGIMK KVKELSTLCG IDACAIIYSP DDSNPEVWPS  60
NSGVQRVVSY FRALPEMTQQ KQMVDQETFL RQRIAKASEK LRKVRRDCRE LEMIEVMFQC  120
LVGNMGLFNL NITDLNDLGY IIDQYVRNLN HRMYTLENSG MEIGESSNVV GAVAPSQGIG  180
IAERVPSTTA PTTAAPDPR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676768882
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466902.11e-92PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK36e-86AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A178UE432e-83A0A178UE43_ARATH; FEM111
STRINGXP_010466902.15e-92(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-85AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]