PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676761364
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 336aa    MW: 37233.6 Da    PI: 4.7499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676761364genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-10183230454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++  rE++RR+ +N++f  L ++l +    + +K +K +iL  A++ +++L
  676761364 183 TKACREKKRRELLNDKFMDLSSVLEPT---RTPKTDKPAILDDAIRVVNHL 230
                6789**********************9...9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-12172244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-8177231No hitNo description
PROSITE profilePS5088812.474179230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9185236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-11186252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MYSSNEDDDD LLAALCFDQS NGGEDPYAFI QTEQENLFPD FGSSGVNLQQ QQPEQEQVCN  60
NIGAQFDSFS GNLQQVCSFT GENNGLGPFG GVVYSSSIGS TQLDLGASFS GVLQQEPRQV  120
CSFRGGNDVS GPLVEKKQDK ACCGVVEINS SSSVGGVKEE LEHVEEECSR KRGRTGSCSK  180
PGTKACREKK RRELLNDKFM DLSSVLEPTR TPKTDKPAIL DDAIRVVNHL RGEAHELKET  240
NQKLLEEIKT LKAEKNELRE EKLVLKADKE KMEQQMKSMT VPSPGFMPSH PAAFHPNKMA  300
VYPSYGYYPN MPMMPYLLQP SQRDTSNDQE NWPKAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169191RKRGRTGSCSKPGTKACREKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00372DAPTransfer from AT3G23210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676761364
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594063.10.0PREDICTED: transcription factor bHLH34
SwissprotQ9LTC71e-159BH034_ARATH; Transcription factor bHLH34
TrEMBLA0A0D3D5K20.0A0A0D3D5K2_BRAOL; Uncharacterized protein
STRINGBo7g040830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40262653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23210.11e-140bHLH family protein
Publications ? help Back to Top
  1. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  2. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]