PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676755540
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 342aa    MW: 37717.9 Da    PI: 7.7493
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676755540genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-1759109155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++y+GVr+++ +gr++AeIrdp++   + r +lg+f+tae+Aa a++ a+++++g
  676755540  59 TRYRGVRRRP-WGRYAAEIRDPTS---KERRWLGTFDTAEQAACAYDCAARAFRG 109
                68********.**********854...4999********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.75E-3059116No hitNo description
PfamPF008475.6E-1059109IPR001471AP2/ERF domain
PROSITE profilePS5103222.60360117IPR001471AP2/ERF domain
SMARTSM003801.2E-3260123IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2160118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-2960117IPR001471AP2/ERF domain
PRINTSPR003673.2E-96172IPR001471AP2/ERF domain
PRINTSPR003673.2E-98399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEEALRNLSG STQSPIPDYE PDTNPLMRNF TNAKPSPVNR KPTSKEPRVT VVGAGNGTTR  60
YRGVRRRPWG RYAAEIRDPT SKERRWLGTF DTAEQAACAY DCAARAFRGS KARTNFTYPV  120
AVAVPDPRFS FFSKKSLTSV RSPIPSAVPL DDPTQEFYGT PPPQKMNTQP FLMCDASYSS  180
RKITPFNSFN GSSSTYYSEP KTVSISPSAS EDYTEFVPQE SSDSGLLQEI VQEFLKKNRK  240
QHPPPTPPPP PPSPPMIGHL ENSSDMSALS IFSDSFFQPT TEPITSKLDG YGNNNQAGDY  300
GCYESMSPAA DGGFTYGSDA WGYQEMLMYG GQLGCTCRKS WG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1852116871Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryo patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676755540
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:11752375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148555.11e-162PREDICTED: ethylene-responsive transcription factor ESR1-like
SwissprotQ9SAD41e-124ESR1_ARATH; Ethylene-responsive transcription factor ESR1
TrEMBLM4DTF81e-161M4DTF8_BRARP; Uncharacterized protein
STRINGBra019801.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140721723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.14e-99ERF family protein
Publications ? help Back to Top
  1. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  2. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]
  3. Capua Y,Eshed Y
    Coordination of auxin-triggered leaf initiation by tomato LEAFLESS.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(12): p. 3246-3251
    [PMID:28270611]
  4. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  5. Luo L,Zeng J,Wu H,Tian Z,Zhao Z
    A Molecular Framework for Auxin-Controlled Homeostasis of Shoot Stem Cells in Arabidopsis.
    Mol Plant, 2018. 11(7): p. 899-913
    [PMID:29730265]