PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676753546
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 330aa    MW: 37653.8 Da    PI: 4.5521
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676753546genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-18115164255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +g+++AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  676753546 115 KFRGVRRRP-WGKYAAEIRDPEQ---RRRIWLGTFSTAEEAAVVYDNAAIRLRG 164
                89*******.**********743...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.6E-29114172IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20115172IPR016177DNA-binding domain
CDDcd000184.90E-32115171No hitNo description
SMARTSM003807.1E-38115178IPR001471AP2/ERF domain
PROSITE profilePS5103222.893115172IPR001471AP2/ERF domain
PfamPF008471.7E-10115164IPR001471AP2/ERF domain
PRINTSPR003672.3E-9116127IPR001471AP2/ERF domain
PRINTSPR003672.3E-9138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDDEYMDLRP VKYTEHKKVI KKYTKKLSVE NKKRSRTGHD SPRLVRVCVM DRDATDSSSD  60
EEEFLFPRRR VKRLINEITV EPCSSDEVSP TGKILAVDSS LPKDSASGAD QNQRKFRGVR  120
RRPWGKYAAE IRDPEQRRRI WLGTFSTAEE AAVVYDNAAI RLRGPDALTN FTVPPQPRPE  180
PEPVQVPEPD SNISVSWTSE SVDDSHHHLS SPTSVLNYQV SEPIDEPAKA VKQEFLEPEP  240
ISWHLGEGTD DSFPLDVPFL DNYFNESLPD MSIFDQSISP IQSSENDFFN DLMLFDHNNI  300
RGDNYSSDIR EIGSMFNDFD DSLISDLLIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20114171462ATERF1
3gcc_A2e-20114171462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676753546
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448151.11e-172PREDICTED: ethylene-responsive transcription factor CRF4
SwissprotQ9SUE31e-158CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A078FPK01e-163A0A078FPK0_BRANA; BnaA08g13940D protein
TrEMBLA0A3P6BUE51e-163A0A3P6BUE5_BRACM; Uncharacterized protein
STRINGXP_006413010.11e-162(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-145cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]