PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752356
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 282aa    MW: 32386.7 Da    PI: 9.6081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752356genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.8e-1393142153
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                +r +h ++Er+RR+++N+ ++ L++++P +   +s++ + a+i e +++Y+k+
  676752356  93 QRLNHIAVERNRRRQMNHFLSILKSMMPLS---YSQRSDQASIIEGTINYLKN 142
                699***************************...******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.52E-1290142No hitNo description
Gene3DG3DSA:4.10.280.109.4E-1190146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-1691156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.68492143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1093142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-998149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MMFQKEYPYG FSRMETSLSY EIVDYFQKVV GSPLNPFSSS ATLSCSIAQQ QSYSTENLSS  60
LQAIGGSGEE PPRKRRKRRR TRSEQKIEEK ENQRLNHIAV ERNRRRQMNH FLSILKSMMP  120
LSYSQRSDQA SIIEGTINYL KNQEQLLQSL QAQLIKTTKS NQSPNIFSDF FIFPQYSTAT  180
VTASSHHHHD QLEVVADVEV TMIERHANIK VLTKTQPKLL FKIINEFYSL GLSTLHLNFT  240
TSSDMSLFTF SVKVEADCQF TTTANEVANA VQEVVKRIHK QN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379KRRKRRR
27579RKRRR
37580RKRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752356
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0700958e-96AY070095.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.
GenBankAY0967048e-96AY096704.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013675453.11e-136transcription factor bHLH99-like
SwissprotQ9FKQ61e-121BH099_ARATH; Transcription factor bHLH99
TrEMBLA0A0D2ZQ381e-135A0A0D2ZQ38_BRAOL; Uncharacterized protein
STRINGBo00615s100.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149591619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65320.11e-107bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]