PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752298
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 375aa    MW: 42457.5 Da    PI: 7.1023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752298genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.00013255299755
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  Er R +ri + +  L +llP+      + ++   iL + v+++k Lq
  676752298 255 TTERERKQRIDDNIKALAKLLPHE----VEENNPELILNEIVDHVKLLQ 299
                57*********************9....455666668888888888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-6248308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-6255306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MQQFPLFLVS DKLFRVFLCS RFMGFNSVFQ SLTELFPQID ARILTTVAMD HPTNADEAAA  60
VVISEVVPLF PQHFTPKLDH LPHCKVEPDM QTDDARLALS QWLHPSQLPR SYLALLNEEE  120
STPDVKPPLD YAVNKLLLTS ARGGFQTIHS PSKNAANKTA SSLVKPSIHV QTRTNNEQVS  180
RIIIYLHLSC QGSSSRVGRS TRKGPLPWSQ NYSQKLRSWK KRSINDDNRD SSHLHGQWKD  240
VPSKQSNKNQ CKAYTTERER KQRIDDNIKA LAKLLPHEVE ENNPELILNE IVDHVKLLQL  300
QMKELSLSRL GGEPTSHPMT LIEGFGHYIH HEEMMTKPLE EMMEDLLAND PDAAASLLES  360
KGLYLMPLSS VQGLC
Cis-element ? help Back to Top
SourceLink
PlantRegMap676752298
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625672.11e-171PREDICTED: uncharacterized protein LOC106331805 isoform X1
TrEMBLA0A0D3BEW21e-170A0A0D3BEW2_BRAOL; Uncharacterized protein
STRINGBo3g100520.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-10LJRHL1-like 2