PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751668
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 401aa    MW: 46205.9 Da    PI: 6.9437
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751668genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.4e-21953145
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               kr e++s r+vt++kRr gilKKA ELS+LCd+++ +++fs++g+
  676751668  9 KRLESSSSRKVTYTKRRSGILKKARELSILCDIDIVLLMFSPSGR 53
               689***************************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.053153IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-27160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-23294IPR002100Transcription factor, MADS-box
CDDcd001205.06E-23254No hitNo description
PRINTSPR004041.3E-16323IPR002100Transcription factor, MADS-box
PfamPF003196.3E-191154IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGRVKVMIKR LESSSSRKVT YTKRRSGILK KARELSILCD IDIVLLMFSP SGRPTILHGD  60
HRCVGDVIAK FAQLTPQERT KRKLESLEAL KKTFMKLDHD VNIHEFLGAR NQNIEGLTNQ  120
VAFFQAQVLE CHRRLSCWAN IARIENIEHL RNLEESLRKS IDRIQVHKFQ NEISPPLSIK  180
DIQESNSLSW LPSNNNQQMI IPGDSSFIPH GEMADREIAS IPVYSSFFES GNQEDQICNL  240
EQQFDHLRQE GNVLGEKYSY STQFGMQEEK EFEPAFELNV QQDPTMYPIS NSVHFPDQSV  300
FSATDHPHHQ TWISDSTCCS NSAFSHSENN QRPDWLERGT EQPINCETKG QQLNQINHPR  360
RNEIDSKIRT RTRRLMNVEE INDYPGSGAN NRHTRPYCPG C
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751668
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428431.11e-159PREDICTED: agamous-like MADS-box protein AGL65 isoform X2
SwissprotQ7X9I01e-128AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A3P5YL321e-129A0A3P5YL32_BRACM; Uncharacterized protein
STRINGXP_010428430.11e-156(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59332543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-122AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]