PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751122
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 186aa    MW: 20261.5 Da    PI: 5.6868
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751122genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.3e-202473255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+tae+Aa+a++ a+++++g
  676751122 24 HYRGVRKRP-WGRYAAEIRDP---GKKNRVWLGTFDTAEQAARAYDSAAREFRG 73
               6********.**********8...5579***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-312481IPR001471AP2/ERF domain
PROSITE profilePS5103223.7752481IPR001471AP2/ERF domain
PfamPF008479.4E-142473IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-222482IPR016177DNA-binding domain
SMARTSM003801.9E-372487IPR001471AP2/ERF domain
CDDcd000183.17E-312480No hitNo description
PRINTSPR003673.0E-112536IPR001471AP2/ERF domain
PRINTSPR003673.0E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSPRQDNVDH TDAAVSGGNT KEVHYRGVRK RPWGRYAAEI RDPGKKNRVW LGTFDTAEQA  60
ARAYDSAARE FRGSKATTNF SFDSGDNGNA TGTLVTAREE RSPLVCRKNV SSVLTPTEVT  120
GYFLDLPHAT ALREELVLGF AVPFEHVEMG LSVGLGTTVE VKTDAADYKL STDLNLDLNL  180
APSVDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-212080162ATERF1
3gcc_A3e-212080162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751122
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013719213.11e-92ethylene-responsive transcription factor 9-like
SwissprotQ9FE672e-51ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A078FUQ77e-89A0A078FUQ7_BRANA; BnaC05g02080D protein
TrEMBLA0A0D3C7E07e-89A0A0D3C7E0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EVD47e-89A0A3P6EVD4_BRAOL; Uncharacterized protein
STRINGBo5g004090.11e-89(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.19e-54erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]