PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 367aa    MW: 42400.5 Da    PI: 7.1673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749210genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-13177225152
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                +r +h ++Er+RR+++N+ ++ Lr+llP++   + ++ + a+i+  A++Y k
  676749210 177 QRINHIAVERNRRRQMNEHINSLRSLLPPS---YIQRGDQASIVGGAINYAK 225
                699***************************...9****************66 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-16175245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-9175232No hitNo description
PROSITE profilePS5088815.224176227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-13178241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-9182233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MERFQGHINP CFLDRKADAR SLEAQRFVLK EEEEEEEESL QDTVPFLQML QSEEDPSPFI  60
SFKEPNFRRL LSLQNLHKPW ELESYLSQED HHLFQSDTNG FYHNQILASS MRGTNKALSS  120
QELPFSRGDM TVPSSSSTPN SRRKRKSSDL VPPEMSREKR KRRKTKPSKN MEDIENQRIN  180
HIAVERNRRR QMNEHINSLR SLLPPSYIQR GDQASIVGGA INYAKVLEQI IQSLESQKRT  240
QQQSSLVENR VNSQETNNHH HHHHLSGISS THEDHQTCIP RIEATLIQNH VNLKVECTKK  300
QGQLLQGIIS LEKLRLTVLH LNISSSSHSA VSYSFNLKME DDCKLESADD ITKVARQIFD  360
IPDDLII
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143163KRKSSDLVPPEMSREKRKRRK
2158163KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886001e-108AF488600.1 Arabidopsis thaliana clone bHLH067 putative bHLH transcription factor mRNA, partial sequence.
GenBankAJ6304811e-108AJ630481.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g61950.
GenBankAK1185271e-108AK118527.1 Arabidopsis thaliana At3g61950 mRNA for putative bHLH transcription factor (bHLH067), complete cds, clone: RAFL19-75-M14.
GenBankAY0887411e-108AY088741.1 Arabidopsis thaliana clone 93825 mRNA, complete sequence.
GenBankBT0052981e-108BT005298.1 Arabidopsis thaliana At3g61950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292401.11e-163transcription factor bHLH67 isoform X2
SwissprotQ700E41e-155BH067_ARATH; Transcription factor bHLH67
TrEMBLR0H7K91e-162R0H7K9_9BRAS; Uncharacterized protein
STRINGXP_006292401.11e-163(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-151bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]