PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676744398
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TCP
Protein Properties Length: 266aa    MW: 29719.9 Da    PI: 7.3443
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676744398genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.25.2e-2942120366
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............s 66 
                g+kdrhsk++T +g+RdRR+Rlsa +a++++dLqd+LG+ ++sk i+WLl++a+  ++ l+ +               +
  676744398  42 GGKDRHSKVCTVRGLRDRRIRLSAMTAIQLYDLQDRLGLSQPSKVIDWLLEAAQNDVDSLPPLqfppgfhpsltagagE 120
                68*************************************************************4444444444433330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.49643101IPR017887Transcription factor TCP subgroup
PfamPF036341.0E-2643105IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MTDTRRTNSI GIKQEGDNHY QASSLSSMRQ NPRIVRVSRI FGGKDRHSKV CTVRGLRDRR  60
IRLSAMTAIQ LYDLQDRLGL SQPSKVIDWL LEAAQNDVDS LPPLQFPPGF HPSLTAGAGE  120
SFPKGILESF DLGSCSSRTD AIPRECLDLE KRKWVKPNES SNLEHGFDID HHFFSNSSQS  180
DKLYFPTSST YNNSSNSYHY NLGHLQHSLL DQSGNVTVAF SNNNLNPPVA ESVSSLFPRY  240
PSFLDGGQLQ LFSSNSNSSK QTDHVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1748102155Putative transcription factor PCF6
5zkt_B2e-1748102155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00497DAPTransfer from AT5G08070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676744398
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2410041e-131AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680480.11e-138transcription factor TCP17-like
SwissprotQ9LEZ91e-107TCP17_ARATH; Transcription factor TCP17
TrEMBLA0A291I3401e-136A0A291I340_BRARR; TCP17a
TrEMBLA0A397ZZ281e-136A0A397ZZ28_BRACM; Uncharacterized protein
STRINGBo3g004670.11e-135(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.16e-98TCP domain protein 17
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]