PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676740106
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family SBP
Protein Properties Length: 179aa    MW: 20597.1 Da    PI: 10.1743
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676740106genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.56.8e-4260134276
                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                Cqv++C++dl+eak+yhrrhkvCevh+ka++v++ g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk+
  676740106  60 CQVDRCTTDLKEAKQYHRRHKVCEVHAKASSVYLLGVKQRFCQQCSRFHELLEFDEAKRSCRRRLAGHNERRRKS 134
                *************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375754.5E-581147IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.102.0E-3253121IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.76157134IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.15E-3859138IPR004333Transcription factor, SBP-box
PfamPF031101.2E-3160133IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEGRKTQGQG YLKKKASMSY LVEEDLENDT DGEEEEKRKG VTDRFKGSSG SSDRGSSRLC  60
QVDRCTTDLK EAKQYHRRHK VCEVHAKASS VYLLGVKQRF CQQCSRFHEL LEFDEAKRSC  120
RRRLAGHNER RRKSPGESFG EGSGGRRGIT SQVMQNQERS RVEMTLPMSN TSFKRPQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-4547133184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646323.11e-116PREDICTED: squamosa promoter-binding-like protein 4 isoform X2
RefseqXP_013646324.11e-116PREDICTED: squamosa promoter-binding-like protein 4 isoform X2
RefseqXP_013752441.11e-116PREDICTED: squamosa promoter-binding-like protein 4 isoform X2
RefseqXP_013752442.11e-116PREDICTED: squamosa promoter-binding-like protein 4 isoform X2
SwissprotQ9S7A92e-81SPL4_ARATH; Squamosa promoter-binding-like protein 4
TrEMBLA0A0D3CQM41e-111A0A0D3CQM4_BRAOL; Squamosa promoter-binding-like protein
STRINGBra039656.1-P1e-108(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-69squamosa promoter binding protein-like 4