PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676738810
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 504aa    MW: 54207.6 Da    PI: 5.7595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676738810genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09330378355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  676738810 330 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 378
                58*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.93E-11325382No hitNo description
SuperFamilySSF474592.75E-17325396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.478327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-17328395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6330378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDISEKDEFS GEKRNGDATT VNYHDSANNP PADWRVSGSN PVSAPIDSYP QENLISACAS  60
SCSPSQMMES FGQTLWYDPT NVQAVGGYGG FNGGNASSSS SFRGNMDRSL EMGWNLPNLL  120
PPKGNGLFLP NASSFLPPSM AQFPADSGFI ERAARFSLFS GGNFSDMVNQ QPLGNPESIG  180
LFLQGGGTMQ GQCPSNEVNV GVAHNDASTA MKDPNVRSSE QANKPNVPGS GNVSEDTQSS  240
GGNGQKGGET SSKGVDSKKR KRNRQNPEAD RSQQSEEEQD NNGGDKKRND EQSPNSQGNK  300
TNSGKQQGKQ TSDPKDGYIH VRARRGQATN SHSLAERVRR EKISERMKFL QDLVPGCNKV  360
TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPQMDFNLE GLLAKDALQL RAGSSSATPF  420
PQNMSMVYPP LPHGFMQQTL SSIGRTVSSP LSPMNGGYKR QETNGWEGDL QNVIHINYGA  480
GDVPPDPQAA ATASLPSSNM KVEP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676738810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3189370.0AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391072.10.0transcription factor bHLH49
SwissprotQ9CAA90.0BH049_ARATH; Transcription factor bHLH49
TrEMBLV4KM380.0V4KM38_EUTSA; Uncharacterized protein
STRINGXP_006391072.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.30.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]