PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737852
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 298aa    MW: 33798.5 Da    PI: 4.369
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737852genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.9e-1611101398
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 v  ++d + s+rl lp ++++ +   k+ ++t +l+ ++g+ W+vk   +k++++ + +++GW++F  +n+  +gDf++F +dg+++f  +v++fr
  676737852  11 IVYNSHDLSLSQRLALPSDHTKYYP--KPLPQTAVLRKPEGNFWTVKW--TKSQDEtTGFEDGWSKFITDNDPIDGDFILFAYDGSRSF--FVSMFR 101
                5554556666799********6665..56999****************..777666699*************************98777..898887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-195101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-186101IPR015300DNA-binding pseudobarrel domain
CDDcd100174.77E-167101No hitNo description
PROSITE profilePS5086313.4939103IPR003340B3 DNA binding domain
SMARTSM010197.6E-179103IPR003340B3 DNA binding domain
PfamPF023626.0E-149101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MVFTPYPDFF IVYNSHDLSL SQRLALPSDH TKYYPKPLPQ TAVLRKPEGN FWTVKWTKSQ  60
DETTGFEDGW SKFITDNDPI DGDFILFAYD GSRSFFVSMF RDGLPVKPKA PVKIQEISDD  120
DEDETTGSDD DDDDDDDDYH DMEKEEDNDQ NMITSLSLGS SDEDDADTAV GEVKKAQSSR  180
KGGSSQKKRA EAIGDPEMYL DDPTNPCFIA ASTCRPVLVI ATQVIKDYDL KFGSTIRFID  240
RFGELEGKLG EWKDGRTVVR RWEEIYKRNN AKPEGLIICE ILRQGGVVRS IKAHFVKN
Cis-element ? help Back to Top
SourceLink
PlantRegMap676737852
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126820.11e-148PREDICTED: B3 domain-containing protein At5g57720-like
SwissprotQ9FHH11e-103Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLA0A078JII41e-146A0A078JII4_BRANA; BnaA02g35370D protein
STRINGBra020417.1-P1e-147(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.15e-88B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]