PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676735010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family CO-like
Protein Properties Length: 316aa    MW: 36208.2 Da    PI: 6.8115
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676735010genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.68.2e-061143234
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
               + r C+ +++  +  +C+ ++  lC  C  + H
  676735010 11 QHRLCDYCDSSVALVYCKADSAKLCLACDKQVH 43
               6689**************************999 PP

2zf-B_box22.91.7e-075698442
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42
                 C+ +++ + + fC + ++ lC++C  ++H +    H+++pl
  676735010 56 LLCDSCDDSPSSVFCDTERSVLCQNCDWQHHTSssslHSRRPL 98
               57***************************88668899988775 PP

3CCT58.62.2e-20272315144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R+ al+RYk K+k+R++eK+irYesRK++AesR R++GrF+k++
  676735010 272 RNSALSRYKAKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAD 315
                899**************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1111057IPR000315B-box-type zinc finger
SMARTSM003361.2E-121057IPR000315B-box-type zinc finger
CDDcd000217.33E-61357No hitNo description
PROSITE profilePS5011910.215398IPR000315B-box-type zinc finger
CDDcd000211.59E-45784No hitNo description
SMARTSM003360.335898IPR000315B-box-type zinc finger
PfamPF062031.5E-14272314IPR010402CCT domain
PROSITE profilePS5101714.326272314IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEKEEEGSHQ QHRLCDYCDS SVALVYCKAD SAKLCLACDK QVHVTNQLFS KHFRSLLCDS  60
CDDSPSSVFC DTERSVLCQN CDWQHHTSSS SLHSRRPLEG FSGCPSATEL MAIVGLDDLT  120
HKALFAPDSA GQHFSLSLSL SQNRHATCGR HKEEMIRQLR ELSRSEPTFL KYETLDPELD  180
LDAGFQFLEP ENDGHLFSST FDYQVSELKW FDDQEHDHDF PYCSSPQKNL SESETNKYVN  240
RRGCTQQESS SVMVPVTTCA TRSTHEINSL ERNSALSRYK AKKKSRRYEK HIRYESRKVR  300
AESRTRIRGR FAKADP
Cis-element ? help Back to Top
SourceLink
PlantRegMap676735010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896341e-113AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142494.11e-162PREDICTED: zinc finger protein CONSTANS-LIKE 13
SwissprotO822561e-141COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLM4CJN91e-161M4CJN9_BRARP; Uncharacterized protein
STRINGBra004423.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-110B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]