PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734676
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 304aa    MW: 33922.6 Da    PI: 4.7207
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734676genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-18102151255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdps+   r+r++lg+f taeeAa  +++a+ +l+g
  676734676 102 KYRGVRQRP-WGKYAAEIRDPST---RTRIWLGTFATAEEAAIGYDRAAIRLKG 151
                8********.**********976...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.128102159IPR001471AP2/ERF domain
SMARTSM003801.3E-35102165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-29102158IPR001471AP2/ERF domain
PfamPF008475.2E-11102151IPR001471AP2/ERF domain
CDDcd000181.06E-32102158No hitNo description
SuperFamilySSF541712.68E-20102159IPR016177DNA-binding domain
PRINTSPR003673.4E-10103114IPR001471AP2/ERF domain
PRINTSPR003673.4E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKSRERKVKY TVHRKITSVT ENPFNGFPKV VKITVTDPCA TDSSSDEEND SLVSPATRVK  60
RYVDEIRFYD SNEGASKREK PARKASNKAA ENGDDGSVKP VKYRGVRQRP WGKYAAEIRD  120
PSTRTRIWLG TFATAEEAAI GYDRAAIRLK GRNALTNFLT PPSSPPMVSE TPVIDLETVS  180
GCDSARESQS SICSPTSVLR FNRNEETEYR TEPVKLEETP ANSSLSDPFF LPDLFLAGDC  240
FWDSEIAPDP LFLDEIQSLP NHNSNETVSS KDSNLSESFP LGVIGDFSSC SWDVDEFFQD  300
HLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-22103158359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676734676
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397817.11e-180ethylene-responsive transcription factor CRF5
SwissprotO823391e-144CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLV4KMY71e-179V4KMY7_EUTSA; Uncharacterized protein
STRINGXP_006397817.11e-180(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.11e-139cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]