PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676732964
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 264aa    MW: 29564.9 Da    PI: 5.0098
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676732964genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-3171129259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++ itY++eHnh+
  676732964  71 SDSWAWRKYGQKPIKGSPYPRGYYRCSSTkGCPARKQVERSRDDPTMILITYTSEHNHP 129
                69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-3262131IPR003657WRKY domain
PROSITE profilePS5081132.29465131IPR003657WRKY domain
SuperFamilySSF1182901.96E-2766131IPR003657WRKY domain
SMARTSM007745.6E-3870130IPR003657WRKY domain
PfamPF031061.2E-2672129IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MKRGLDMART YNDHESSQET GPESPNSSTF NAAISSHSPK RSRRSIEKRV VNVPMKEMEG  60
SRHKGDTTPP SDSWAWRKYG QKPIKGSPYP RGYYRCSSTK GCPARKQVER SRDDPTMILI  120
TYTSEHNHPW PLTSSSRNGS KPKPEPKPEP EPELEVPELE PEEAENNNNK FMVLGRDIET  180
TPPCVVDEFA WFSEMETTSS TVLESPIFSS EKKAAVSASA DDVAVFFPMG EEDESLFADL  240
GELPECSVVF RHMSSVVGSQ VEIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-2148131679Disease resistance protein RRS1
5w3x_D2e-2148131679Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676732964
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300710.0KF430071.1 Brassica rapa WRKY transcription factor 65 (WRKY65) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584462.11e-164PREDICTED: probable WRKY transcription factor 65 isoform X1
RefseqXP_013696453.11e-164probable WRKY transcription factor 65 isoform X1
RefseqXP_013696456.11e-164probable WRKY transcription factor 65 isoform X2
SwissprotQ9LP561e-156WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A0D3CEG91e-162A0A0D3CEG9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F8Y81e-162A0A3P6F8Y8_BRAOL; Uncharacterized protein
STRINGBo5g058590.11e-163(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53832849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-147WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]