PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729508
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TCP
Protein Properties Length: 264aa    MW: 28407.6 Da    PI: 10.15
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729508genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.64.3e-38412273120
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.............. 88 
                +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a+ s   +s+ +s+              
  676729508  41 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGHSTTNSTstnctlsssldhkp 140
                79*************************************************************9999977733333222222222245566777778888 PP

        TCP  89 .......................................................kaaksaakskksqksaasalnlakesrakara 120
                                                                        ++ + ++++++q+++a+al ++++++++a +
  676729508 141 llgsspfilgkrvradedsgggkdetmgsfatpagfwavparpdfgqvwsfaagaPQEMFLQQQQQQQQQPAAALFVHQQQQQQAAM 227
                888889999999999999999999999999999999999999999999999987644444445566666666566666655555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-3446202IPR005333Transcription factor, TCP
PROSITE profilePS5136927.89246100IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSSTNDGVMI SNGAIMERQR QQQQQQQQQQ QQQSSDGALV VKKPPAKDRH SKVDGRGRRI  60
RMPIICAARV FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPASF STASVSIRGH  120
STTNSTSTNC TLSSSLDHKP LLGSSPFILG KRVRADEDSG GGKDETMGSF ATPAGFWAVP  180
ARPDFGQVWS FAAGAPQEMF LQQQQQQQQQ PAAALFVHQQ QQQQAAMGEA SAARVGNYLP  240
GHLNLLASLS GGAPGSGRRE DDQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729508
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026884e-48CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007014.11e-140transcription factor TCP7
RefseqXP_024007015.11e-140transcription factor TCP7
RefseqXP_024007016.11e-140transcription factor TCP7
RefseqXP_024007017.11e-140transcription factor TCP7
SwissprotQ9FMX21e-118TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A1J3ITE11e-160A0A1J3ITE1_NOCCA; Transcription factor TCP7 (Fragment)
STRINGXP_006394596.11e-139(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.14e-72TCP family protein