PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729414
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TCP
Protein Properties Length: 365aa    MW: 40635.3 Da    PI: 6.7691
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729414genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP96.16.6e-3063181366
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................................... 65 
                g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak  +++l+ +                                     
  676729414  63 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLqfphgfnqmypnlifgnsgigesstsafpgtnlgfle 162
                78*************************************************************7777777777766666666666555555555555555 PP

        TCP  66 ..................s 66 
                                  +
  676729414 163 swdlggsssrtrsriadaT 181
                5555543333332222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.78964122IPR017887Transcription factor TCP subgroup
PfamPF036342.0E-2764134IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MRSRECDEEE IQAKQEGDNN ENHNHQVNLS NMLQQQNQPV SSSRQWTSAF RNPRIVRVSR  60
TFGGKDRHSK VCTVRGLRDR RIRLSVPTAI QLYDLQDRLG LSQPSKVIDW LLEAAKDDVD  120
KLPPLQFPHG FNQMYPNLIF GNSGIGESST SAFPGTNLGF LESWDLGGSS SRTRSRIADA  180
TTTQRESFDL DKGKWIKHDE NSNQQDHGGF DMNHQHFSLT NPYNNNNNNA SSYYNLGHLQ  240
HSLDQSGNNV TVAISNVPNN NSNNLNLPPP SSSAGDGSQL FFGPPPPAMS SLFPTYPSFL  300
GASHQHHHHH LVDGAGNLQL FSSNANAASQ QQMMTGNSSL IRPFHHLMTS NHDTDRHSSD  360
NDSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1969123155Putative transcription factor PCF6
5zkt_B3e-1969123155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729414
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280693.10.0transcription factor TCP5
SwissprotQ9FME30.0TCP5_ARATH; Transcription factor TCP5
TrEMBLR0EXI80.0R0EXI8_9BRAS; Uncharacterized protein
STRINGXP_006280693.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.10.0TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]