PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 400aa    MW: 43425.4 Da    PI: 4.8229
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727820genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.8e-31189247259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  676727820 189 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 247
                699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.879183249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-31183249IPR003657WRKY domain
SuperFamilySSF1182903.01E-26186249IPR003657WRKY domain
SMARTSM007746.3E-38188248IPR003657WRKY domain
PfamPF031066.7E-26190247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDNYQGDLTD VVRGIGGGHV LSPETPSPPS IWPLPQPSPS DLQINPFGDP FLSMTDPLLQ  60
ELNAVTNSSY FSTAEDNAND NNNNNNGFLL PKVVEDDHIK SQCSIFPRIR ISHSNIIHDS  120
SPCNSPAMSA HVVAAAAAAS PRGIINVDTN SPRNCVLVDG NTFSSQIQIS SPRNLGLKRS  180
RSSGEVVPSD LWAWRKYGQK PIKGSPFPRG YYRCSSSKGC SARKQVERSR TDPNMLVITY  240
TSEHNHPWPI QRNALAGSTR SSSSSSCNPN SSKSSTANAT APSNGPPNNT HLSSSTSSPS  300
PLSSSVVKDE LREEDIELEN IEDDEDNQIA PYRPELHDQH QPDDFFADLE ELEGDSLSML  360
LSQGCTSDRN NKTMASDGIS DFFGWSGGHS GNDDRDPRSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-231902491879Disease resistance protein RRS1
5w3x_D2e-231902491879Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727820
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896281e-162AC189628.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490768.10.0PREDICTED: probable WRKY transcription factor 14
RefseqXP_018490770.10.0PREDICTED: probable WRKY transcription factor 14
RefseqXP_018490771.10.0PREDICTED: probable WRKY transcription factor 14
SwissprotQ9SA800.0WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A3P5YNE20.0A0A3P5YNE2_BRACM; Uncharacterized protein
STRINGBo7g043420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-163WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]