PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727814
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 289aa    MW: 33664.1 Da    PI: 5.6101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727814genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.5e-05166210555
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 n + r+RR+ri ++ +eL +l+P  +      K   ae+   A +Y+k Lq
  676727814 166 QNNAARKRRRRITEKTQELGKLIPGgQ------KH-TAEMFHAAAKYVKFLQ 210
                57788*******************844......32.3666666666666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-8165223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-8166224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-5167215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDCLSYFSNS DFIQLQDCFI PDVDMIMPET DTFFFQEQPQ HQLHQPLHQE EVLSQSLFGF  60
NHLDPFFEPF LPSQEIFLPN TEAKFFNESQ DLESFPTPKH QKLINSTFHF NNNHDPLFIS  120
PNPNQLGSFI TEASTFSEFR VPDFSPAFKF GWSDQNDTKK PELPSQNNAA RKRRRRITEK  180
TQELGKLIPG GQKHTAEMFH AAAKYVKFLQ AQIEILRLSQ TKMQTQECPR VGREMQLLLA  240
SQEIQEKLSR EEVCVVPRDM VQVLKAEECI LRNPKISRDI NKLLPTDRD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170174RKRRR
2171176KRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727814
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415438.21e-144transcription factor bHLH52 isoform X1
SwissprotQ9SA821e-126BH052_ARATH; Transcription factor bHLH52
TrEMBLA0A178WDY51e-131A0A178WDY5_ARATH; Uncharacterized protein
STRINGXP_010478497.11e-136(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-115bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]